Our experimental results

• MaxMin (Gap = 2000 and MinSize = 100)
  
  
  • # of conversed gene pairs reported.
    (The figures in the parenthesis are the percentage of coverage over the number of published conserved gene pairs.)

    Experiment No.	# of Published Conserved Gene Pairs	MUMmer	MaxMin (k = 0)	MaxMin (k = 3)
    i	51	33 (65%)	37 (73%)	39 (76%)
    ii	192	99 (52%)	119 (62%)	137 (71%)
    iii	101	55 (54%)	60 (59%)	68 (67%)
    iv	38	26 (68%)	30 (79%)	30 (79%)
    v	72	46 (64%)	48 (67%)	49 (68%)
    vi	31	12 (39%)	16 (52%)	18 (58%)
    vii	30	21 (70%)	19 (63%)	23 (77%)
    viii	46	25 (54%)	33 (72%)	34 (74%)
    ix	30	13 (43%)	14 (47%)	15 (50%)
    x	93	61 (66%)	68 (73%)	72 (77%)
    Average	-	58%	65%	70%

  • The degree of coverage and the preciseness of the output
    

    Experiment No.	Degree of coverage			Preciseness
    	MUMmer	MaxMin (k = 0)	MaxMin (k = 3)	MUMmer	MaxMin (k = 0)	MaxMin (k = 3)
    i	50%	55%	57%	22%	25%	24%
    ii	40%	42%	56%	25%	25%	27%
    iii	48%	51%	62%	16%	18%	18%
    iv	57%	58%	63%	28%	28%	27%
    v	49%	57%	61%	34%	32%	32%
    vi	52%	44%	50%	13%	16%	17%
    vii	43%	48%	62%	55%	51%	53%
    viii	49%	44%	57%	38%	38%	40%
    ix	28%	25%	29%	36%	38%	39%
    x	62%	66%	71%	35%	32%	33%
    Average	48%	49%	57%	30%	30%	31%

  
  
• MinCardinality (Gap = 2000 and MinSize = 100)
  • # of conversed gene pairs reported.
    (The figures in the parenthesis are the percentage of coverage over the number of published conserved gene pairs.)

    Experiment No.	# of Published Conserved Gene Pairs	MUMmer	MinCard (k = 0)	MinCard (k = 3)
    i	51	33 (65%)	37 (73%)	39 (76%)
    ii	192	99 (52%)	119 (62%)	133 (69%)
    iii	101	55 (54%)	60 (59%)	65 (64%)
    iv	38	26 (68%)	30 (79%)	29 (76%)
    v	72	46 (64%)	48 (67%)	48 (67%)
    vi	31	12 (39%)	16 (52%)	18 (58%)
    vii	30	21 (70%)	19 (63%)	23 (77%)
    viii	46	25 (54%)	33 (72%)	33 (72%)
    ix	30	13 (43%)	14 (47%)	15 (50%)
    x	93	61 (66%)	68 (73%)	70 (75%)
    Average	-	58%	65%	68%

  • The degree of coverage and the preciseness of the output

    Experiment No.	Degree of coverage			Preciseness
    	MUMmer	MinCard (k = 0)	MinCard (k = 3)	MUMmer	MinCard (k = 0)	MinCard (k = 3)
    i	50%	55%	57%	22%	25%	24%
    ii	40%	42%	52%	25%	25%	26%
    iii	48%	51%	58%	16%	18%	18%
    iv	57%	58%	62%	28%	28%	26%
    v	49%	57%	59%	34%	32%	33%
    vi	52%	44%	45%	13%	16%	17%
    vii	43%	48%	56%	55%	51%	53%
    viii	49%	44%	48%	38%	38%	37%
    ix	28%	25%	30%	36%	38%	40%
    x	62%	66%	71%	35%	32%	33%
    Average	48%	49%	54%	30%	30%	31%