| Effective siRNAs | ||||||||
| ID | gene name | accession number | start codon position | termi- nating codon position |
target site position | length of mRNA | target site | length of siRNA |
| 1 | ß-actin | NM_001101.2 | 74 | 1201 | 1045 | 1793 | AATGAAGATCAAGATCATTGCTC | 21 |
| 2 | gamma-actin | NM_001614.2 | 75 | 1202 | 82 | 1919 | AAGAGATCGCCGCGCTGGTCATT | 21 |
| 3 | AIB1 (estrogen receptor coactivator) | NM_006534.1 | 184 | 4422 | 511 | 6754 | AAAGACUCCUUAGGACCGCUUUU | 21 |
| 4 | ARC21 | AF006086.1 | 26 | 562 | 206 | 840 | AAGAATGAAGCTGATAGGACCTT | 21 |
| 5 | ATR interacting protein | AF451323.1 | 33 | 2408 | 288 | 2509 | AAGGTCCACAGATTATTAGATGG | 21 |
| 6 | ATR interacting protein | AF451323.1 | 33 | 2408 | 498 | 2509 | CTAGAGGAACAGAGAAGATCACA | 21 |
| 7 | ATR interacting protein | AF451323.1 | 33 | 2408 | 901 | 2509 | AAGAAGAGGCCCAGAAAAGCTTT | 21 |
| 8 | Cdc14A | AF064102.1 | 464 | 2335 | 552 | 2438 | GCACAGTAAATACCCACTATTTC | 21 |
| 9 | cdk1 | NM_001786.2 | 130 | 1023 | 254 | 1235 | AAGGGGTTCCTAGTACTGCAATT | 21 |
| 10 | CENP-E | NM_001813.1 | 91 | 8082 | 1034 | 8257 | AAACTCTTACTGCTCTCCAGTTT | 21 |
| 11 | cytoplasmic dynein 1 heavy chain | U53530.1 | <1 | >2694 | 509 | 2694 | AAGGCCAAGGAGGCGCTGGAATT | 21 |
| 12 | DIP13-alpha (DCC interacting protein) | AF424738.1 | 57 | 2186 | 218 | 3042 | AAGUGCAGCAACACACCUGACCU | 21 |
| 13 | DIP13-beta (DCC interacting protein) | NM_018171.2 | 219 | 2213 | 735 | 3257 | AAGCAGCACCUCUCCUCCCUUCA | 21 |
| 14 | Eg5 | NM_004523.2 | 141 | 3311 | 1687 | 4908 | AACTGGATCGTAAGAAGGCAGTT | 21 |
| 15 | emerin | NM_000117.1 | 59 | 823 | 686 | 1252 | AACCGTGCTCCTGGGGCTGGGCT | 21 |
| 16 | GalTII (galactosyltransferase II) | AY050570.1 | 90 | 1079 | 954 | 1928 | AAGCACGCGACGCUGGCGCGCGA | 21 |
| 17 | GalTII (galactosyltransferase II) | AY050570.1 | 90 | 1079 | 549 | 1928 | AAGGCGGACGACGACUCCUUCGC | 21 |
| 18 | GAS41 | NM_006530.1 | 222 | 905 | 548 | 1404 | AAGACCTGTAACCCTGTATCATT | 21 |
| 19 | Hec-1 | NM_006101.1 | 105 | 2033 | 1621 | 2150 | AAGTTCAAAAGCTGGATGATCTTTA | 23 |
| 20 | keratin 18 | NM_000224.1 | 52 | 1344 | 1205 | 1412 | AAGATGGCGAGGACTTTAATCTT | 21 |
| 21 | lamin A/C | NM_005572.2 | 213 | 1931 | 820 | 2032 | AACTGGACTTCCAGAAGAACATC | 21 |
| 22 | Lamin A/C | NM_005572.2 | 213 | 1931 | 615 | 2032 | AAGGACCUGGAGGCUCUGCUGAA | 21 |
| 23 | lamin B1 | NM_005573.2 | 369 | 2129 | 1040 | 2882 | AACGCGCTTGGTAGAGGTGGATT | 21 |
| 24 | lamin B2 | M94362.1 | <1 | 1548 | 1457 | 4270 | AAGAGGAGGAGGAAGCCGAGTTT | 21 |
| 25 | LAP2 | NM_003276.1 | 205 | 2289 | 241 | 2490 | AAAGACAAGTTGAAGAGTGAGTT | 21 |
| 26 | Mad1 | AF083811.1 | 250 | 2406 | 2092 | 2683 | AACCAGCGGCTCAAGGAGGTTTTCC | 23 |
| 27 | Mammalian septin (MSF) | AF189712.2 | 746 | 2014 | 1217 | 3970 | AAAATCAGCCGGAAGTCGGTGCA | 21 |
| 28 | Methyl-CpG-binding protein 2 (MeCP2) | NM_004992.2 | 168 | 1628 | 291 | 10182 | AAGCAUGAGCCCGUGCAGCCAUC | 21 |
| 29 | Myc-induced nuclear antigen 53 (mina53) | NM_032778.3 | 214 | 1608 | 256 | 2221 | GGGCCGGCTCCCTGTAAGCAGAT | 21 |
| 30 | NuMA | Z11583.1 | 157 | 6504 | 4144 | 7154 | AAGGCGTGGCAGGAGAAGTTCTT | 21 |
| 31 | Nup153 | NM_005124.2 | 201 | 4628 | 2793 | 5687 | AAGGCAGACTCTACCAAATGTTT | 21 |
| 32 | Origin recognition complex protein 6 (Orc6) | NM_014321.1 | 49 | 807 | 528 | 1635 | AAUGGUAGCCACAUCCGGUGUAA | 21 |
| 33 | Origin recognition complex protein 6 (Orc6) | NM_014321.1 | 49 | 807 | 589 | 1635 | AAGATTGGACAGCAGGUCGACAA | 21 |
| 34 | P160 ROCK | U43195.1 | 1 | 4065 | 564 | 4065 | AATCCATTCCATGGGTTTTATTC | 21 |
| 35 | P160 ROCK | U43195.1 | 1 | 4065 | 637 | 4065 | AAGTTAGCAGATTTTGGTACTTG | 21 |
| 36 | P160 ROCK | U43195.1 | 1 | 4065 | 1956 | 4065 | AAAAGAGGCTCAAGACATGCTTA | 21 |
| 37 | P160 ROCK | U43195.1 | 1 | 4065 | 2778 | 4065 | AATAGACAAGAGATTACAGATAA | 21 |
| 38 | hRad9 | U53174.1 | 77 | 1252 | 308 | 2102 | AAGUCUUUCCUGUCUGUCUUCCG | 21 |
| 39 | Signalling Adapter/scaffold protein (h/m Shc) | U73377.1 | 195 | 1946 | 675 | 3664 | TCCTACTTGGTTCGGTACATGGG | 21 |
| 40 | p66 ShcA | U73377.1 | 195 | 1946 | 234 | 3664 | CGGAATGAGTCTCTGTCATCGTC | 21 |
| 41 | Tissue Factor (hTF) | M16553.1 | 76 | 963 | 165 | 2104 | CGGCGCUUCAGGCACUACAAATA | 21 |
| 42 | Tissue Factor (hTF) | M16553.1 | 76 | 963 | 370 | 2104 | GTGAAGCAGACGUACUUGGCACG | 21 |
| 43 | TSG101 (a ubiquitin enzyme 2 variant protein) | NM_006292.2 | 127 | 1299 | 539 | 1550 | AACCUCCAGUCUUCUCUCGUCCU | 21 |
| 44 | VASP | NM_003370.1 | 255 | 1397 | 1341 | 2207 | AAAGAGGAAATCATTGAAGCCTT | 21 |
| 45 | vimentin | NM_003380.1 | 123 | 1523 | 468 | 1851 | AACTACATCGACAAGGTGCGCTT | 21 |
| 46 | vimentin | NM_003380.1 | 123 | 1523 | 1267 | 1851 | AATACCAAGACCTGCTCAATGTT | 21 |
| 47 | vimentin | NM_003380.1 | 123 | 1523 | 985 | 1851 | AAGAATGGTACAAATCCAAGTTT | 21 |
| 48 | vimentin | NM_003380.1 | 123 | 1523 | 1159 | 1851 | AAATGGAAGAGAACTTTGCCGTT | 21 |